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Principal CADD Scientist

Genesis Therapeutics is assembling a world-class computational chemistry team to revolutionize drug discovery through cutting-edge machine learning and biophysical simulation. We are seeking a Principal CADD Scientist to join our on-site discovery team in San Diego, working directly with scientists  in our state-of-the-art wet lab and with our distributed computational chemistry and CADD science teams across the US.


What You Will Do (Key Responsibilities)
  • Utilize a combination of industry-standard and proprietary AI-powered CADD tools to guide small molecule drug discovery programs across a diverse target portfolio, including novel targets with limited chemical precedents.
  • Use approaches like virtual screening, molecular simulation, and potency and ADMET prediction to support key decision-making in drug discovery efforts.
  • Collaborate closely with medicinal chemists in molecular design and the development of project-specific computational approaches.
  • Act as a cross-team connector, effectively communicating between our computational chemistry and medicinal chemistry teams to ensure seamless information flow and collaborative decision making.
  • Adapt to a fast-paced environment where innovation and quick iteration are encouraged.


What you’ll bring
  • PhD in Computational Chemistry, Structural Biology, or a related field. This particular role may also be suitable for PhD-level scientists with degrees in organic or medicinal chemistry with extensive experience in the lab, who have transitioned into industry roles in CADD.
  • Deep understanding of structure-based drug design and protein-ligand interactions.
  • Proficiency with industry-standard CADD tools such as MOE, PyMOL, and Schrodinger Suite.
  • Minimum of 5+ years of industry experience as a CADD scientist in pharma or biotech, with hands-on experience in active drug discovery programs.


What we offer
  • Competitive Pay
  • Health Care Plans (including Medical, Dental, and Vision, fully covered for the employees)
  • Stock Option Eligibility
  • 401(k) Plan
  • Open PTO Policy
  • Paid Company Holidays
  • Free lunch and snacks at our offices


Genesis Therapeutics is unifying AI and biotech to discover novel and breakthrough treatments for patients with severe and devastating conditions. Genesis was founded on groundbreaking molecular ML research and since has established itself as the industry leader in AI for small molecule drug discovery. Our team of accomplished biotech leaders and expert drug hunters joins forces with deep learning researchers and software engineers who are pioneering predictive and generative AI technologies for molecules.


Our team has created the industry's most advanced molecular AI platform called GEMS (Genesis Exploration of Molecular Space), to accelerate and optimize small molecule drug discovery and to enable the discovery of novel first-in-class and best-in-class small molecule drugs for challenging and/or undruggable targets. 


The company has leveraged GEMS to build an internal pipeline with multiple programs against high-value targets, including data-poor and canonically undruggable targets where GEMS is uniquely advantaged. In addition, Genesis has signed AI-focused platform collaborations with major pharmaceutical companies, including most recently Incyte Corporation (Feb 2025) and Gilead Sciences (Sept 2024).


We raised a $200M series B in August 2023, and have raised over $300M in funding from top technology and biotech investors, including Andreessen Horowitz, Rock Springs Capital, T. Rowe Price, Fidelity, Radical Ventures, NVentures (NVIDIA's VC arm), BlackRock, and Menlo Ventures. 


Genesis is headquartered in Burlingame, CA, with a fully integrated laboratory in San Diego. We are proud to be an inclusive workplace and an Equal Opportunity Employer.

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What You Should Know About Principal CADD Scientist, Genesis Therapeutics

Join Genesis Therapeutics as a Principal CADD Scientist in sunny San Diego, CA, and help us revolutionize drug discovery with your expertise! In this exciting role, you will leverage cutting-edge machine learning and biophysical simulation to guide our small molecule drug discovery programs. You'll be utilizing both industry-standard and proprietary AI-powered CADD tools to tackle a diverse range of targets, including novel ones with unique challenges. Collaboration is key here; you'll work closely with our talented medicinal chemists to enhance molecular design and develop the most effective computational approaches for your projects. Your day-to-day will involve virtual screening, molecular simulation, and the prediction of potency and ADMET properties to inform crucial decisions that drive our drug discovery efforts forward. At Genesis Therapeutics, we thrive on innovation and quick iteration, so adaptability in a fast-paced environment will be essential. If you’re bringing a PhD in Computational Chemistry, Structural Biology, or a related field, plus a wealth of industry experience (5+ years as a CADD scientist), we want to hear from you. Join our mission as we unite AI and biotech to create groundbreaking therapies for patients facing severe conditions. With a competitive salary, comprehensive healthcare plans, and a culture that values your contributions, Genesis is the perfect place for you to advance your career while making a real impact.

Frequently Asked Questions (FAQs) for Principal CADD Scientist Role at Genesis Therapeutics
What are the key responsibilities of the Principal CADD Scientist at Genesis Therapeutics?

As a Principal CADD Scientist at Genesis Therapeutics, you'll engage in a variety of responsibilities essential for advancing drug discovery. You will utilize AI-powered CADD tools for small molecule drug discovery, support decision-making through virtual screening and molecular simulation, and collaborate closely with medicinal chemists on molecular design. Additionally, effective communication across teams will play a key role in ensuring collaborative success.

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What qualifications are needed for the Principal CADD Scientist position at Genesis Therapeutics?

To excel as a Principal CADD Scientist at Genesis Therapeutics, candidates should possess a PhD in Computational Chemistry, Structural Biology, or a related field. Alternatively, PhD-level scientists with degrees in organic or medicinal chemistry, along with extensive lab experience in CADD, may also qualify. Furthermore, a deep understanding of structure-based drug design and a minimum of 5 years of industry experience in drug discovery are essential.

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What skills are essential for success as a Principal CADD Scientist at Genesis Therapeutics?

Success in the Principal CADD Scientist role at Genesis Therapeutics requires proficiency in industry-standard CADD tools such as MOE, PyMOL, and Schrodinger Suite. Additionally, a strong grasp of protein-ligand interactions and structure-based drug design is crucial. The ability to adapt to a fast-paced environment and facilitate effective communication between computational and medicinal chemistry teams will greatly enhance collaboration and innovation.

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What job opportunities are available at Genesis Therapeutics for CADD professionals?

Genesis Therapeutics offers various career opportunities for CADD professionals, especially within their world-class computational chemistry team. As a Principal CADD Scientist, you'll contribute significantly to cutting-edge drug discovery efforts. Candidates with varying levels of experience in CADD or related fields may find fulfilling roles that cater to their skill sets, particularly in therapeutic advancements and AI integration.

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What benefits does Genesis Therapeutics offer to employees in the Principal CADD Scientist role?

Employees joining Genesis Therapeutics as a Principal CADD Scientist can expect a competitive pay structure along with comprehensive health care plans that fully cover medical, dental, and vision expenses. Additional perks include stock option eligibility, a 401(k) plan, an open PTO policy, paid company holidays, and free lunch and snacks at the office, fostering a supportive and inclusive workplace environment.

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Common Interview Questions for Principal CADD Scientist
How do you utilize AI in CADD for drug discovery?

In your response, highlight your experience with AI tools and how you've applied them in CADD for drug discovery. Mention specific software you've used, describe successful projects, and illustrate how AI has enhanced decision-making in your past roles.

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Can you explain a successful project where you employed virtual screening?

When addressing this question, focus on a specific project where virtual screening played a key role. Discuss the objectives, tools used, the insights gained, and the impact of your findings on the overall drug discovery process.

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What strategies do you employ for effective communication across teams?

For this question, illustrate your interpersonal skills by sharing examples of how you've facilitated communication between different scientific teams. Emphasize how establishing cross-functional relationships contributed to project success.

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Describe a challenge you faced in drug discovery and how you overcame it.

Select a relevant challenge from your experience and explain the context and your approach to resolving it. Focus on your problem-solving skills, adaptability, and the outcome to showcase your competencies effectively.

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What is your experience with structure-based drug design?

Give a comprehensive overview of your experience with structure-based drug design, including specific applications, successful outcomes, and insights gained from previous projects. Highlight tools and methodologies that supported your strategies.

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How do you stay updated on the latest trends in computational chemistry?

Discuss your commitment to continuous learning. Mention strategies such as attending conferences, reading relevant journals, and networking with industry professionals to stay abreast of trends, technology advancements, and best practices.

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What do you consider when selecting CADD tools for a project?

In your response, discuss the factors that influence your choice of CADD tools, such as project requirements, quality of data, level of user support, and compatibility with existing systems. Provide examples from your past experiences.

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Can you elaborate on your experience with molecular simulation?

Share specific instances of when you've utilized molecular simulation in your projects. Describe the methodologies used, challenges addressed, and how the outcomes influenced the direction of drug discovery efforts.

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What role does collaboration play in drug discovery, and how do you promote it?

Highlight the importance of collaboration in drug discovery and detail your approach to fostering a collaborative environment. Cite examples where teamwork has led to innovative solutions and improved project outcomes.

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What are your long-term goals in the field of CADD?

Articulate your aspirations within the CADD domain, including your desire for professional growth. Discuss how you envision contributing to the field while aligning with the mission and vision of companies like Genesis Therapeutics.

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DATE POSTED
April 8, 2025

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